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Korarchaeota Scanning electron micrograph of the Obsidian Pool enrichment culture showing Klasifikasi ilmiahDomain Archa

Korarchaeota

Korarchaeota
Scanning electron micrograph of the Obsidian Pool enrichment culture, showing Korarchaeota.
Klasifikasi ilmiah
Domain:
Archaea
Kerajaan:
"Proteoarchaeota"
Filum:
'Korarchaeota'

Barns et al. 1996
species
Sinonim
  • Korarchaeota Barns et al. 1996
  • Xenarchaea
  • Xenarchaeota

Dalam taksonomi, Korarchaeota adalah filum dari Archaea. Nama ini berasal dari kata benda Yunani koros atau kore, yang berarti ‘‘pemuda’’ atau ‘‘wanita muda,’’ dan kata sifat Yunani archaios yang berarti ‘‘kuno.’’ Mereka juga dikenal sebagai Xenarchaeota.

Analisis sekuens gen 16S rRNA mereka menunjukkan bahwa mereka adalah keturunan sangat bercabang yang tidak termasuk dalam kelompok archaea utama, Crenarchaeota dan Euryarchaeota. Analisis genom satu Korarchaeota yang diperkaya dari kultur campuran mengungkapkan sejumlah fitur seperti-Crenarchaeota dan Euryarchaeota dan mendukung hipotesis dari keturunan bercabang awal.

Ekologi sunting

Korarchaeota hanya ditemukan di lingkungan hidrotermal. Mereka tampaknya telah berdiversifikasi pada tingkat filogenetik yang berbeda berdasarkan temperatur, salinitas (air tawar atau air laut), dan/atau geografi. Korarchaeota ditemukan di alam dalam jumlah yang sedikit.

Setiap mata air panas ini (searah jarum jam dari kiri atas: Uzon4, Uzon7, Uzon8, Uzon9, Mut11, Mut13) di Kamchatka ditemukan mengandung Korarchaeota.

Referensi sunting

  1. See the NCBI webpage on Korarchaeota. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Diakses tanggal 2007-03-19. 
  2. James G. Elkins et al., A korarchaeal genome reveals insights into the evolution of the Archaea, Harvard University, PNAS, June 10, 2008, Vol. 105, no. 23, www.pnas.org/cgi/doi/10.1073/pnas.0801980105
  3. Barns SM, Delwiche CF, Palmer JD, Pace NR. (August 1996). "Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences". Proc. Natl. Acad. Sci. USA. 93 (17): 9188–93. Bibcode:1996PNAS...93.9188B. doi:10.1073/pnas.93.17.9188. PMC 38617 . PMID 8799176. 
  4. Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter KO. (July 2008). "A korarchaeal genome reveals insights into the evolution of the Archaea". Proc. Natl. Acad. Sci. USA. 105 (1): 8805–6. Bibcode:2008PNAS..105.8102E. doi:10.1073/pnas.0801980105. PMC 2430366 . PMID 18535141. 
  5. ^ Auchtung TA, Shyndriayeva G, Cavanaugh CM (2011). "16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia". Extremophiles. 15 (1): 105–116. doi:10.1007/s00792-010-0340-5. PMID 21153671. 
  6. Reigstad LJ, Jorgensen SL, Schleper C (2010). "Diversity is and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka jamaica". ISME J. 4 (3): 346–56. doi:10.1038/ismej.2009.126. PMID 19956276. 
  7. Auchtung Thomas A. (2007) Ecology of the hydrothermal candidate archaeal division, Korarchaeota. PhD thesis, Harvard University.

Bacaan lebih lanjut sunting

Jurnal ilmiah sunting

Database ilmiah sunting

Pranala luar sunting

  • NCBI taxonomy page for Korarchaeota
  • Search Tree of Life taxonomy pages for Korarchaeota
  • Search Species2000 page for Korarchaeota
  • MicrobeWiki page for Korarchaeota
  • LSPN page for Korarchaeota
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Tanggal penerbitan:
KorarchaeotaScanning electron micrograph of the Obsidian Pool enrichment culture showing Korarchaeota Klasifikasi ilmiahDomain ArchaeaKerajaan Proteoarchaeota Filum Korarchaeota Barns et al 1996species Candidatus Korarchaeum cryptofilum Elkins et al 2008 environmental samplesSinonimKorarchaeota Barns et al 1996 Xenarchaea Xenarchaeota Dalam taksonomi Korarchaeota adalah filum dari Archaea 1 Nama ini berasal dari kata benda Yunani koros atau kore yang berarti pemuda atau wanita muda dan kata sifat Yunani archaios yang berarti kuno 2 Mereka juga dikenal sebagai Xenarchaeota Analisis sekuens gen 16S rRNA mereka menunjukkan bahwa mereka adalah keturunan sangat bercabang yang tidak termasuk dalam kelompok archaea utama Crenarchaeota dan Euryarchaeota 3 Analisis genom satu Korarchaeota yang diperkaya dari kultur campuran mengungkapkan sejumlah fitur seperti Crenarchaeota dan Euryarchaeota dan mendukung hipotesis dari keturunan bercabang awal 4 Daftar isi 1 Ekologi 2 Referensi 3 Bacaan lebih lanjut 3 1 Jurnal ilmiah 3 2 Database ilmiah 4 Pranala luarEkologi suntingKorarchaeota hanya ditemukan di lingkungan hidrotermal Mereka tampaknya telah berdiversifikasi pada tingkat filogenetik yang berbeda berdasarkan temperatur salinitas air tawar atau air laut dan atau geografi 5 Korarchaeota ditemukan di alam dalam jumlah yang sedikit 5 6 7 nbsp Setiap mata air panas ini searah jarum jam dari kiri atas Uzon4 Uzon7 Uzon8 Uzon9 Mut11 Mut13 di Kamchatka ditemukan mengandung Korarchaeota 5 Referensi sunting See the NCBI webpage on Korarchaeota Data extracted from the NCBI taxonomy resources National Center for Biotechnology Information Diakses tanggal 2007 03 19 James G Elkins et al A korarchaeal genome reveals insights into the evolution of the Archaea Harvard University PNAS June 10 2008 Vol 105 no 23 www pnas org cgi doi 10 1073 pnas 0801980105 Barns SM Delwiche CF Palmer JD Pace NR August 1996 Perspectives on archaeal diversity thermophily and monophyly from environmental rRNA sequences Proc Natl Acad Sci USA 93 17 9188 93 Bibcode 1996PNAS 93 9188B doi 10 1073 pnas 93 17 9188 PMC 38617 nbsp PMID 8799176 Pemeliharaan CS1 Banyak nama authors list link Elkins JG Podar M Graham DE Makarova KS Wolf Y Randau L Hedlund BP Brochier Armanet C Kunin V Anderson I Lapidus A Goltsman E Barry K Koonin EV Hugenholtz P Kyrpides N Wanner G Richardson P Keller M Stetter KO July 2008 A korarchaeal genome reveals insights into the evolution of the Archaea Proc Natl Acad Sci USA 105 1 8805 6 Bibcode 2008PNAS 105 8102E doi 10 1073 pnas 0801980105 PMC 2430366 nbsp PMID 18535141 Pemeliharaan CS1 Banyak nama authors list link a b c Auchtung TA Shyndriayeva G Cavanaugh CM 2011 16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka Russia Extremophiles 15 1 105 116 doi 10 1007 s00792 010 0340 5 PMID 21153671 Reigstad LJ Jorgensen SL Schleper C 2010 Diversity is and abundance of Korarchaeota in terrestrial hot springs of Iceland and Kamchatka jamaica ISME J 4 3 346 56 doi 10 1038 ismej 2009 126 PMID 19956276 Auchtung Thomas A 2007 Ecology of the hydrothermal candidate archaeal division Korarchaeota PhD thesis Harvard University Bacaan lebih lanjut suntingJurnal ilmiah sunting Stackebrandt E Frederiksen W Garrity GM Grimont PA Kampfer P Maiden MC Nesme X Rossello Mora R Swings J Truper HG Vauterin L Ward AC Whitman WB 2002 Report of the ad hoc committee for the re evaluation of the species definition in bacteriology Int J Syst Evol Microbiol 52 Pt 3 1043 1047 doi 10 1099 ijs 0 02360 0 PMID 12054223 Gurtler V Mayall BC 2001 Genomic approaches to typing taxonomy and evolution of bacterial isolates Int J Syst Evol Microbiol 51 Pt 1 3 16 PMID 11211268 Dalevi D Hugenholtz P Blackall LL 2001 A multiple outgroup approach to resolving division level phylogenetic relationships using 16S rDNA data Int J Syst Evol Microbiol 51 Pt 2 385 391 PMID 11321083 Keswani J Whitman WB 2001 Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes Int J Syst Evol Microbiol 51 Pt 2 667 678 PMID 11321113 Young JM 2001 Implications of alternative classifications and horizontal gene transfer for bacterial taxonomy Int J Syst Evol Microbiol 51 Pt 3 945 953 doi 10 1099 00207713 51 3 945 PMID 11411719 Christensen H Bisgaard M Frederiksen W Mutters R Kuhnert P Olsen JE 2001 Is characterization of a single isolate sufficient for valid publication of a new genus or species Proposal to modify recommendation 30b of the Bacteriological Code 1990 Revision Int J Syst Evol Microbiol 51 Pt 6 2221 2225 doi 10 1099 00207713 51 6 2221 PMID 11760965 Christensen H Angen O Mutters R Olsen JE Bisgaard M 2000 DNA DNA hybridization determined in micro wells using covalent attachment of DNA Int J Syst Evol Microbiol 50 1095 1102 doi 10 1099 00207713 50 3 1095 PMID 10843050 Xu HX Kawamura Y Li N Zhao L Li TM Li ZY Shu S Ezaki T 2000 A rapid method for determining the G C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube Int J Syst Evol Microbiol 50 1463 1469 doi 10 1099 00207713 50 4 1463 PMID 10939651 Young JM 2000 Suggestions for avoiding on going confusion from the Bacteriological Code Int J Syst Evol Microbiol 50 1687 1689 No abstract available doi 10 1099 00207713 50 4 1687 PMID 10939677 Hansmann S Martin W 2000 Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes influence of excluding poorly alignable sites from analysis Int J Syst Evol Microbiol 50 1655 1663 doi 10 1099 00207713 50 4 1655 PMID 10939673 Tindall BJ 1999 Proposal to change the Rule governing the designation of type strains deposited under culture collection numbers allocated for patent purposes Int J Syst Bacteriol 49 3 1317 1319 doi 10 1099 00207713 49 3 1317 PMID 10490293 Tindall BJ 1999 Proposal to change Rule 18a Rule 18f and Rule 30 to limit the retroactive consequences of changes accepted by the ICSB Int J Syst Bacteriol 49 3 1321 1322 doi 10 1099 00207713 49 3 1321 PMID 10425797 Tindall BJ 1999 Misunderstanding the Bacteriological Code Int J Syst Bacteriol 49 3 1313 1316 doi 10 1099 00207713 49 3 1313 PMID 10425796 Tindall BJ 1999 Proposals to update and make changes to the Bacteriological Code Int J Syst Bacteriol 49 3 1309 1312 doi 10 1099 00207713 49 3 1309 PMID 10425795 Palys T Nakamura LK Cohan FM 1997 Discovery and classification of ecological diversity in the bacterial world the role of DNA sequence data Int J Syst Bacteriol 47 4 1145 1156 doi 10 1099 00207713 47 4 1145 PMID 9336922 Euzeby JP 1997 List of Bacterial Names with Standing in Nomenclature a folder available on the Internet Int J Syst Bacteriol 47 2 590 592 doi 10 1099 00207713 47 2 590 PMID 9103655 Burggraf S Heyder P Eis N 1997 A pivotal Archaea group Nature 385 6619 780 Bibcode 1997Natur 385 780B doi 10 1038 385780a0 PMID 9039908 Barns SM Delwiche CF Palmer JD Pace NR 1996 Perspectives on archaeal diversity thermophily and monophyly from environmental rRNA sequences Proc Natl Acad Sci USA 93 17 9188 9193 Bibcode 1996PNAS 93 9188B doi 10 1073 pnas 93 17 9188 PMC 38617 nbsp PMID 8799176 Clayton RA Sutton G Hinkle PS Jr Bult C Fields C 1995 Intraspecific variation in small subunit rRNA sequences in GenBank why single sequences may not adequately represent prokaryotic taxa Int J Syst Bacteriol 45 3 595 599 doi 10 1099 00207713 45 3 595 PMID 8590690 Barns SM Fundyga RE Jeffries MW Pace NR 1994 Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment Proc Natl Acad Sci USA 91 5 1609 1613 Bibcode 1994PNAS 91 1609B doi 10 1073 pnas 91 5 1609 PMC 43212 nbsp PMID 7510403 Murray RG Schleifer KH 1994 Taxonomic notes a proposal for recording the properties of putative taxa of procaryotes Int J Syst Bacteriol 44 1 174 176 doi 10 1099 00207713 44 1 174 PMID 8123559 Winker S Woese CR 1991 A definition of the domains Archaea Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics Syst Appl Microbiol 14 4 305 310 doi 10 1016 s0723 2020 11 80303 6 PMID 11540071 Woese CR Kandler O Wheelis ML 1990 Towards a natural system of organisms proposal for the domains Archaea Bacteria and Eucarya Proc Natl Acad Sci USA 87 12 4576 4579 Bibcode 1990PNAS 87 4576W doi 10 1073 pnas 87 12 4576 PMC 54159 nbsp PMID 2112744 Achenbach Richter L Woese CR 1988 The ribosomal gene spacer region in archaebacteria Syst Appl Microbiol 10 211 214 doi 10 1016 s0723 2020 88 80002 x PMID 11542149 McGill TJ Jurka J Sobieski JM Pickett MH Woese CR Fox GE 1986 Characteristic archaebacterial 16S rRNA oligonucleotides Syst Appl Microbiol 7 194 197 doi 10 1016 S0723 2020 86 80005 4 PMID 11542064 Woese CR Olsen GJ 1984 The phylogenetic relationships of three sulfur dependent archaebacteria Syst Appl Microbiol 5 97 105 doi 10 1016 S0723 2020 84 80054 5 PMID 11541975 Woese CR Fox GE 1977 Phylogenetic structure of the prokaryotic domain the primary kingdoms Proc Natl Acad Sci USA 74 11 5088 5090 Bibcode 1977PNAS 74 5088W doi 10 1073 pnas 74 11 5088 PMC 432104 nbsp PMID 270744 Database ilmiah sunting Referensi PubMed untuk Korarchaeota Referensi PubMed Central untuk Korarchaeota Referensi Google Scholar untuk KorarchaeotaPranala luar suntingNCBI taxonomy page for Korarchaeota Search Tree of Life taxonomy pages for Korarchaeota Search Species2000 page for Korarchaeota MicrobeWiki page for Korarchaeota LSPN page for Korarchaeota Diperoleh dari https id wikipedia org w index php title Korarchaeota amp oldid 18810075